J4_4V7I_003

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7I_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5652

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V7I|1|A8|C|601
4V7I|1|A8|A|602
4V7I|1|A8|A|603
4V7I|1|A8|G|604
*
4V7I|1|A8|C|624
4V7I|1|A8|G|625
4V7I|1|A8|A|626
4V7I|1|A8|A|627
4V7I|1|A8|G|628
*
4V7I|1|A8|C|635
4V7I|1|A8|G|636
4V7I|1|A8|A|637
4V7I|1|A8|G|638
*
4V7I|1|A8|C|650
4V7I|1|A8|G|651
4V7I|1|A8|U|652
4V7I|1|A8|U|653
4V7I|1|A8|A|654
4V7I|1|A8|A|655
4V7I|1|A8|G|656

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L35

Chain AE

50S ribosomal protein L4

Chain AL

50S ribosomal protein L15