J4_4V7I_011

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7I_011 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.3693

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V7I|1|A8|G|2643
4V7I|1|A8|G|2644
4V7I|1|A8|G|2645
4V7I|1|A8|C|2646
*
4V7I|1|A8|G|2674
4V7I|1|A8|A|2675
4V7I|1|A8|C|2676
*
4V7I|1|A8|G|2731
4V7I|1|A8|G|2732
4V7I|1|A8|A|2733
4V7I|1|A8|A|2734
4V7I|1|A8|G|2735
*
4V7I|1|A8|U|2769
4V7I|1|A8|G|2770
4V7I|1|A8|C|2771

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AJ

50S ribosomal protein L13

Chain AK

50S ribosomal protein L14