J4_4V7J_015
3D structure
- PDB id
- 4V7J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCGU*GCC
- Length
- 18 nucleotides
- Bulged bases
- 4V7J|1|Av|U|8, 4V7J|1|Av|U|47, 4V7J|1|Av|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7J|1|Av|G|7
4V7J|1|Av|U|8
4V7J|1|Av|G|9
4V7J|1|Av|G|10
*
4V7J|1|Av|C|25
4V7J|1|Av|G|26
4V7J|1|Av|U|27
*
4V7J|1|Av|A|43
4V7J|1|Av|A|44
4V7J|1|Av|G|45
4V7J|1|Av|G|46
4V7J|1|Av|U|47
4V7J|1|Av|C|48
4V7J|1|Av|G|49
4V7J|1|Av|U|50
*
4V7J|1|Av|G|64
4V7J|1|Av|C|65
4V7J|1|Av|C|66
Current chains
- Chain Av
- RNA (77-MER)
Nearby chains
- Chain A0
- 50S ribosomal protein L27
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 50S ribosomal protein L16
- Chain Aa
- Small subunit ribosomal RNA; SSU rRNA
- Chain Am
- 30S ribosomal protein S13
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