J4_4V7K_014
3D structure
- PDB id
- 4V7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4V7K|1|Aa|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7K_014 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0576
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V7K|1|Aa|G|575
4V7K|1|Aa|G|576
4V7K|1|Aa|G|577
*
4V7K|1|Aa|C|764
4V7K|1|Aa|G|765
4V7K|1|Aa|A|766
4V7K|1|Aa|A|767
4V7K|1|Aa|A|768
4V7K|1|Aa|G|769
*
4V7K|1|Aa|C|810
4V7K|1|Aa|C|811
4V7K|1|Aa|C|812
4V7K|1|Aa|U|813
4V7K|1|Aa|A|814
4V7K|1|Aa|A|815
4V7K|1|Aa|A|816
4V7K|1|Aa|C|817
4V7K|1|Aa|G|818
4V7K|1|Aa|A|819
4V7K|1|Aa|U|820
4V7K|1|Aa|G|821
*
4V7K|1|Aa|C|879
4V7K|1|Aa|C|880
Current chains
- Chain Aa
- RNA (1504-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ah
- 30S ribosomal protein S8
- Chain Al
- 30S ribosomal protein S12
- Chain Ao
- 30S ribosomal protein S15
- Chain Aq
- 30S ribosomal protein S17
Coloring options: