J4_4V7K_028

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V7K|1|Ba|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7K_028 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0748

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V7K|1|Ba|G|115
4V7K|1|Ba|A|116
4V7K|1|Ba|G|117
4V7K|1|Ba|U|118
4V7K|1|Ba|A|119
4V7K|1|Ba|A|120
4V7K|1|Ba|C|121
4V7K|1|Ba|G|122
*
4V7K|1|Ba|U|239
4V7K|1|Ba|C|240
*
4V7K|1|Ba|G|286
4V7K|1|Ba|U|287
4V7K|1|Ba|A|288
4V7K|1|Ba|G|289
*
4V7K|1|Ba|C|311
4V7K|1|Ba|C|312

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bp

30S ribosomal protein S16

Chain Bq

30S ribosomal protein S17