J4_4V7K_032

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

4V7K|1|Bw|U|8, 4V7K|1|Bw|U|47, 4V7K|1|Bw|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7K_032 not in the Motif Atlas

Homologous match to J4_4V9Q_031

Geometric discrepancy: 0.2464

The information below is about J4_4V9Q_031

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V7K|1|Bw|G|7
4V7K|1|Bw|U|8
4V7K|1|Bw|G|9
4V7K|1|Bw|G|10
*
4V7K|1|Bw|C|25
4V7K|1|Bw|G|26
4V7K|1|Bw|U|27
*
4V7K|1|Bw|A|43
4V7K|1|Bw|A|44
4V7K|1|Bw|G|45
4V7K|1|Bw|G|46
4V7K|1|Bw|U|47
4V7K|1|Bw|C|48
4V7K|1|Bw|G|49
*
4V7K|1|Bw|C|65
4V7K|1|Bw|C|66

Current chains

Chain Bw

RNA (77-MER)

Nearby chains

Chain B6

50S ribosomal protein L33

Chain Bg

30S ribosomal protein S7

Chain Bk

30S ribosomal protein S11