3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGAAG*CGCC*GAG*CGUAG
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V7L_024 not in the Motif Atlas
Homologous match to J4_7A0S_002
Geometric discrepancy: 0.1412
The information below is about J4_7A0S_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

4V7L|1|DA|C|297
4V7L|1|DA|G|298
4V7L|1|DA|A|299
4V7L|1|DA|A|300
4V7L|1|DA|G|301
*
4V7L|1|DA|C|316
4V7L|1|DA|G|317
4V7L|1|DA|C|318
4V7L|1|DA|C|319
*
4V7L|1|DA|G|323
4V7L|1|DA|A|324
4V7L|1|DA|G|325
*
4V7L|1|DA|C|337
4V7L|1|DA|G|338
4V7L|1|DA|U|339
4V7L|1|DA|A|340
4V7L|1|DA|G|341

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain DF
50S ribosomal protein L4
Chain DY
50S ribosomal protein L24

Coloring options:


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