J4_4V7M_008

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7M_008 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0789

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4V7M|1|BA|C|297
4V7M|1|BA|G|298
4V7M|1|BA|A|299
4V7M|1|BA|A|300
4V7M|1|BA|G|301
*
4V7M|1|BA|C|316
4V7M|1|BA|G|317
4V7M|1|BA|C|318
4V7M|1|BA|C|319
*
4V7M|1|BA|G|323
4V7M|1|BA|A|324
4V7M|1|BA|G|325
*
4V7M|1|BA|C|337
4V7M|1|BA|G|338
4V7M|1|BA|U|339
4V7M|1|BA|A|340
4V7M|1|BA|G|341

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24