J4_4V7M_020

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AUCG*CACC*GGCAUUCC*GU

Length

18 nucleotides

Bulged bases

4V7M|1|CW|U|8, 4V7M|1|CW|U|45, 4V7M|1|CW|U|46, 4V7M|1|CW|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7M|1|CW|A|7
4V7M|1|CW|U|8
4V7M|1|CW|C|9
4V7M|1|CW|G|10
*
4V7M|1|CW|C|24
4V7M|1|CW|A|25
4V7M|1|CW|C|26
4V7M|1|CW|C|27
*
4V7M|1|CW|G|41
4V7M|1|CW|G|42
4V7M|1|CW|C|43
4V7M|1|CW|A|44
4V7M|1|CW|U|45
4V7M|1|CW|U|46
4V7M|1|CW|C|47
4V7M|1|CW|C|48
*
4V7M|1|CW|G|64
4V7M|1|CW|U|65

Current chains

Chain CW

tRNA-Gln

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CZ

capreomycin IA

Chain DA

Large subunit ribosomal RNA; LSU rRNA