J4_4V7M_036
3D structure
- PDB id
- 4V7M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structures of Capreomycin bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V7M|1|CX|U|8, 4V7M|1|CX|U|47, 4V7M|1|CX|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7M_036 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.2367
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
4V7M|1|CX|G|7
4V7M|1|CX|U|8
4V7M|1|CX|G|9
4V7M|1|CX|G|10
*
4V7M|1|CX|C|25
4V7M|1|CX|G|26
4V7M|1|CX|U|27
*
4V7M|1|CX|A|43
4V7M|1|CX|A|44
4V7M|1|CX|G|45
4V7M|1|CX|G|46
4V7M|1|CX|U|47
4V7M|1|CX|C|48
4V7M|1|CX|G|49
*
4V7M|1|CX|C|65
4V7M|1|CX|C|66
Current chains
- Chain CX
- RNA (77-MER)
Nearby chains
- Chain CM
- 30S ribosomal protein S13
- Chain CW
- Transfer RNA; tRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DQ
- 50S ribosomal protein L16
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