J4_4V7P_015

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7P_015 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1114

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V7P|1|BA|G|2643
4V7P|1|BA|G|2644
4V7P|1|BA|G|2645
4V7P|1|BA|C|2646
*
4V7P|1|BA|G|2674
4V7P|1|BA|A|2675
4V7P|1|BA|C|2676
*
4V7P|1|BA|G|2731
4V7P|1|BA|G|2732
4V7P|1|BA|A|2733
4V7P|1|BA|A|2734
4V7P|1|BA|G|2735
*
4V7P|1|BA|C|2769
4V7P|1|BA|G|2770
4V7P|1|BA|C|2771

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13

Chain BK

50S ribosomal protein L14