J4_4V7P_016

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V7P|1|CA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7P_016 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1531

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V7P|1|CA|C|268
4V7P|1|CA|U|269
*
4V7P|1|CA|G|370
4V7P|1|CA|A|371
4V7P|1|CA|G|372
4V7P|1|CA|U|373
4V7P|1|CA|A|374
4V7P|1|CA|C|375
*
4V7P|1|CA|G|399
4V7P|1|CA|G|400
4V7P|1|CA|A|401
4V7P|1|CA|A|402
4V7P|1|CA|U|403
4V7P|1|CA|C|404
4V7P|1|CA|U|405
4V7P|1|CA|G|406
*
4V7P|1|CA|U|421
4V7P|1|CA|A|422
4V7P|1|CA|A|423
4V7P|1|CA|G|424

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CH

50S ribosomal protein L9

Chain CX

50S ribosomal protein L28