J4_4V7P_020

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4V7P|1|CA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7P_020 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1116

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V7P|1|CA|G|1310
4V7P|1|CA|G|1311
4V7P|1|CA|U|1312
4V7P|1|CA|U|1313
4V7P|1|CA|C|1314
*
4V7P|1|CA|G|1338
4V7P|1|CA|G|1339
4V7P|1|CA|U|1340
4V7P|1|CA|U|1341
4V7P|1|CA|A|1342
4V7P|1|CA|G|1343
*
4V7P|1|CA|C|1404
4V7P|1|CA|U|1405
*
4V7P|1|CA|A|1597
4V7P|1|CA|C|1598
4V7P|1|CA|C|1599
4V7P|1|CA|C|1600
4V7P|1|CA|G|1601
4V7P|1|CA|U|1602
4V7P|1|CA|A|1603
4V7P|1|CA|C|1604

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C4

50S ribosomal protein L34

Chain CT

50S ribosomal protein L23