J4_4V7R_005

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

4V7R|1|B1|A|1452, 4V7R|1|B1|U|1455, 4V7R|1|B1|A|1879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|B1|C|1451
4V7R|1|B1|A|1452
4V7R|1|B1|A|1453
4V7R|1|B1|A|1454
4V7R|1|B1|U|1455
4V7R|1|B1|A|1456
4V7R|1|B1|U|1457
*
4V7R|1|B1|A|1475
4V7R|1|B1|G|1476
*
4V7R|1|B1|U|1877
4V7R|1|B1|G|1878
4V7R|1|B1|A|1879
4V7R|1|B1|U|1880
*
4V7R|1|B1|A|2352
4V7R|1|B1|G|2353

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BQ

60S ribosomal protein L17-A

Chain Ba

60S ribosomal protein L31-A