J4_4V7R_010

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUG*CGGG*CUCUUAAGGUAG*UGAAUG

Length

25 nucleotides

Bulged bases

4V7R|1|B1|U|2269, 4V7R|1|B1|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|B1|C|2192
4V7R|1|B1|U|2193
4V7R|1|B1|G|2194
*
4V7R|1|B1|C|2248
4V7R|1|B1|G|2249
4V7R|1|B1|G|2250
4V7R|1|B1|G|2251
*
4V7R|1|B1|C|2265
4V7R|1|B1|U|2266
4V7R|1|B1|C|2267
4V7R|1|B1|U|2268
4V7R|1|B1|U|2269
4V7R|1|B1|A|2270
4V7R|1|B1|A|2271
4V7R|1|B1|G|2272
4V7R|1|B1|G|2273
4V7R|1|B1|U|2274
4V7R|1|B1|A|2275
4V7R|1|B1|G|2276
*
4V7R|1|B1|U|2310
4V7R|1|B1|G|2311
4V7R|1|B1|A|2312
4V7R|1|B1|A|2313
4V7R|1|B1|U|2314
4V7R|1|B1|G|2315

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain Ae

Unassigned secondary structure

Chain BB

60S ribosomal protein L2