J4_4V7T_002

3D structure

PDB id

4V7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V7T|1|AA|C|183, 4V7T|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7T_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2038

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V7T|1|AA|G|142
4V7T|1|AA|A|143
4V7T|1|AA|G|144
*
4V7T|1|AA|C|178
4V7T|1|AA|A|179
4V7T|1|AA|U|180
4V7T|1|AA|A|181
4V7T|1|AA|A|182
4V7T|1|AA|C|183
4V7T|1|AA|G|184
*
4V7T|1|AA|C|193
4V7T|1|AA|C|194
4V7T|1|AA|A|195
4V7T|1|AA|A|196
4V7T|1|AA|A|197
4V7T|1|AA|G|198
*
4V7T|1|AA|U|219
4V7T|1|AA|G|220
4V7T|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20