J4_4V83_015

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V83|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V83_015 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0828

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V83|1|CA|G|115
4V83|1|CA|A|116
4V83|1|CA|G|117
4V83|1|CA|U|118
4V83|1|CA|A|119
4V83|1|CA|A|120
4V83|1|CA|C|121
4V83|1|CA|G|122
*
4V83|1|CA|U|239
4V83|1|CA|C|240
*
4V83|1|CA|G|286
4V83|1|CA|U|287
4V83|1|CA|A|288
4V83|1|CA|G|289
*
4V83|1|CA|C|311
4V83|1|CA|C|312

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17