J4_4V84_001

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V84|1|AA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V84_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0826

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V84|1|AA|G|115
4V84|1|AA|A|116
4V84|1|AA|G|117
4V84|1|AA|U|118
4V84|1|AA|A|119
4V84|1|AA|A|120
4V84|1|AA|C|121
4V84|1|AA|G|122
*
4V84|1|AA|U|239
4V84|1|AA|C|240
*
4V84|1|AA|G|286
4V84|1|AA|U|287
4V84|1|AA|A|288
4V84|1|AA|G|289
*
4V84|1|AA|C|311
4V84|1|AA|C|312

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17