3D structure

PDB id
4V84 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
4V84|1|AA|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V84_001 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.0826
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V84|1|AA|G|115
4V84|1|AA|A|116
4V84|1|AA|G|117
4V84|1|AA|U|118
4V84|1|AA|A|119
4V84|1|AA|A|120
4V84|1|AA|C|121
4V84|1|AA|G|122
*
4V84|1|AA|U|239
4V84|1|AA|C|240
*
4V84|1|AA|G|286
4V84|1|AA|U|287
4V84|1|AA|A|288
4V84|1|AA|G|289
*
4V84|1|AA|C|311
4V84|1|AA|C|312

Current chains

Chain AA
ribosomal RNA 16S

Nearby chains

Chain AL
30S ribosomal protein S12
Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


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