J4_4V84_019
3D structure
- PDB id
- 4V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CU*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 4V84|1|DA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V84_019 not in the Motif Atlas
- Homologous match to J4_9DFE_001
- Geometric discrepancy: 0.1473
- The information below is about J4_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V84|1|DA|C|268
4V84|1|DA|U|269
*
4V84|1|DA|G|370
4V84|1|DA|A|371
4V84|1|DA|G|372
4V84|1|DA|U|373
4V84|1|DA|A|374
4V84|1|DA|C|375
*
4V84|1|DA|G|399
4V84|1|DA|G|400
4V84|1|DA|A|401
4V84|1|DA|A|402
4V84|1|DA|U|403
4V84|1|DA|C|404
4V84|1|DA|U|405
4V84|1|DA|G|406
*
4V84|1|DA|U|421
4V84|1|DA|A|422
4V84|1|DA|A|423
4V84|1|DA|G|424
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain DH
- 50S ribosomal protein L9
- Chain DX
- 50S ribosomal protein L28
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