J4_4V87_011

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V87|1|BA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V87_011 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0727

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V87|1|BA|G|115
4V87|1|BA|A|116
4V87|1|BA|G|117
4V87|1|BA|U|118
4V87|1|BA|A|119
4V87|1|BA|A|120
4V87|1|BA|C|121
4V87|1|BA|G|122
*
4V87|1|BA|U|239
4V87|1|BA|C|240
*
4V87|1|BA|G|286
4V87|1|BA|U|287
4V87|1|BA|A|288
4V87|1|BA|G|289
*
4V87|1|BA|C|311
4V87|1|BA|C|312

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BO

30S RIBOSOMAL PROTEIN S12

Chain BS

30S RIBOSOMAL PROTEIN S16

Chain BT

30S RIBOSOMAL PROTEIN S17