J4_4V87_021
3D structure
- PDB id
- 4V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CU*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 4V87|1|DA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V87_021 not in the Motif Atlas
- Homologous match to J4_9DFE_001
- Geometric discrepancy: 0.102
- The information below is about J4_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V87|1|DA|C|268
4V87|1|DA|U|269
*
4V87|1|DA|G|370
4V87|1|DA|A|371
4V87|1|DA|G|372
4V87|1|DA|U|373
4V87|1|DA|A|374
4V87|1|DA|C|375
*
4V87|1|DA|G|399
4V87|1|DA|G|400
4V87|1|DA|A|401
4V87|1|DA|A|402
4V87|1|DA|U|403
4V87|1|DA|C|404
4V87|1|DA|U|405
4V87|1|DA|G|406
*
4V87|1|DA|U|421
4V87|1|DA|A|422
4V87|1|DA|A|423
4V87|1|DA|G|424
Current chains
- Chain DA
- RNA (2909-MER)
Nearby chains
- Chain DK
- 50S ribosomal protein L9
- Chain DZ
- 50S ribosomal protein L28
Coloring options: