J4_4V88_004
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 4V88|1|A1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V88_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0515
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V88|1|A1|G|1492
4V88|1|A1|G|1493
4V88|1|A1|U|1494
4V88|1|A1|U|1495
4V88|1|A1|C|1496
*
4V88|1|A1|G|1520
4V88|1|A1|G|1521
4V88|1|A1|U|1522
4V88|1|A1|U|1523
4V88|1|A1|A|1524
4V88|1|A1|G|1525
*
4V88|1|A1|C|1614
4V88|1|A1|C|1615
*
4V88|1|A1|G|1829
4V88|1|A1|G|1830
4V88|1|A1|U|1831
4V88|1|A1|C|1832
4V88|1|A1|G|1833
4V88|1|A1|U|1834
4V88|1|A1|A|1835
4V88|1|A1|C|1836
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BR
- 60S ribosomal protein L19-A
- Chain BX
- 60S ribosomal protein L25
- Chain Bg
- 60S ribosomal protein L34-A
- Chain Bj
- 60S ribosomal protein L37-A
- Chain Bk
- 60S ribosomal protein L38
- Chain Bl
- 60S ribosomal protein L39
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