3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
8P9A|1|AR|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8P9A|1|AR|G|1492
8P9A|1|AR|G|1493
8P9A|1|AR|U|1494
8P9A|1|AR|U|1495
8P9A|1|AR|C|1496
*
8P9A|1|AR|G|1520
8P9A|1|AR|G|1521
8P9A|1|AR|U|1522
8P9A|1|AR|U|1523
8P9A|1|AR|A|1524
8P9A|1|AR|G|1525
*
8P9A|1|AR|C|1614
8P9A|1|AR|C|1615
*
8P9A|1|AR|G|1829
8P9A|1|AR|G|1830
8P9A|1|AR|U|1831
8P9A|1|AR|C|1832
8P9A|1|AR|G|1833
8P9A|1|AR|U|1834
8P9A|1|AR|A|1835
8P9A|1|AR|C|1836

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain AT
5.8S ribosomal RNA; 5.8S rRNA
Chain CT
60S ribosomal protein L19-A
Chain CZ
60S ribosomal protein L25
Chain DI
60S ribosomal protein L34-A
Chain DL
60S ribosomal protein L37-A
Chain DM
60S ribosomal protein L38
Chain DN
60S ribosomal protein L39

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