J4_4V88_009

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V88_009 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.047

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V88|1|A1|U|3010
4V88|1|A1|A|3011
4V88|1|A1|A|3012
*
4V88|1|A1|U|3042
4V88|1|A1|C|3043
*
4V88|1|A1|G|3098
4V88|1|A1|C|3099
4V88|1|A1|U|3100
*
4V88|1|A1|A|3134
4V88|1|A1|U|3135
4V88|1|A1|G|3136

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B

Chain BV

60S ribosomal protein L23-A