J4_8P9A_020

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8P9A|1|AR|U|3010
8P9A|1|AR|A|3011
8P9A|1|AR|A|3012
*
8P9A|1|AR|U|3042
8P9A|1|AR|C|3043
*
8P9A|1|AR|G|3098
8P9A|1|AR|C|3099
8P9A|1|AR|U|3100
*
8P9A|1|AR|A|3134
8P9A|1|AR|U|3135
8P9A|1|AR|G|3136

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CQ

60S ribosomal protein L16-A

Chain CX

60S ribosomal protein L23-A