J4_4V88_023

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

4V88|1|A6|A|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35140.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V88|1|A6|C|99
4V88|1|A6|A|100
4V88|1|A6|U|101
4V88|1|A6|U|102
4V88|1|A6|A|103
4V88|1|A6|A|104
4V88|1|A6|A|105
4V88|1|A6|U|106
4V88|1|A6|C|107
*
4V88|1|A6|G|307
4V88|1|A6|C|308
4V88|1|A6|C|309
*
4V88|1|A6|G|357
4V88|1|A6|U|358
4V88|1|A6|A|359
4V88|1|A6|A|360
4V88|1|A6|C|361
*
4V88|1|A6|G|383
4V88|1|A6|G|384

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CE

40S ribosomal protein S4-A

Chain CI

40S ribosomal protein S8-A

Chain CL

40S ribosomal protein S11-A

Chain CX

40S ribosomal protein S23-A