Motif J4_35140.1 Version J4_35140.1 of this group appears in releases 3.80 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | break | 17 | 18 | 1-2 | 1-18 | 3-18 | 5-14 | 7-11 | 9-10 | 12-13 | 16-17 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4V88_023 | 4V88 | 0.0000 | 1 | A6 | SSU rRNA | C | 99 | A | 100 | U | 101 | U | 102 | A | 103 | A | 104 | A | 105 | U | 106 | C | 107 | * | G | 307 | C | 308 | C | 309 | * | G | 357 | U | 358 | A | 360 | C | 361 | * | G | 383 | G | 384 | cSH | cWW | ntHS | tHW | ntHW | cWW | cWW | cWW |
| 2 | J4_8C3A_021 | 8C3A | 0.0761 | 1 | CM | SSU rRNA | C | 99 | A | 100 | U | 101 | U | 102 | A | 103 | A | 104 | A | 105 | U | 106 | C | 107 | * | G | 305 | C | 306 | C | 307 | * | G | 355 | U | 356 | A | 358 | C | 359 | * | G | 381 | G | 382 | ncSH | cWW | tHS | tHW | ntHW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUAAAUC*GCC*GUAAC*GG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUAAAU*C*UAA* | 2 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: