J4_4V89_004

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V89|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V89_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1006

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V89|1|BA|C|268
4V89|1|BA|C|269
*
4V89|1|BA|G|370
4V89|1|BA|A|371
4V89|1|BA|G|372
4V89|1|BA|U|373
4V89|1|BA|A|374
4V89|1|BA|G|375
*
4V89|1|BA|U|399
4V89|1|BA|G|400
4V89|1|BA|A|401
4V89|1|BA|A|402
4V89|1|BA|U|403
4V89|1|BA|A|404
4V89|1|BA|U|405
4V89|1|BA|G|406
*
4V89|1|BA|C|421
4V89|1|BA|A|422
4V89|1|BA|A|423
4V89|1|BA|G|424

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L28