J4_4V89_009

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4V89|1|BA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V89_009 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0698

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V89|1|BA|U|1313
4V89|1|BA|C|1314
*
4V89|1|BA|G|1338
4V89|1|BA|G|1339
4V89|1|BA|U|1340
4V89|1|BA|G|1341
4V89|1|BA|A|1342
4V89|1|BA|G|1343
*
4V89|1|BA|C|1404
4V89|1|BA|U|1405
*
4V89|1|BA|A|1597
4V89|1|BA|A|1598
4V89|1|BA|U|1599
4V89|1|BA|C|1600
4V89|1|BA|G|1601
4V89|1|BA|U|1602
4V89|1|BA|A|1603

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23