J4_4V8A_016

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

4V8A|1|BA|A|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8A_016 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.0718

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V8A|1|BA|G|1444
4V8A|1|BA|A|1445
4V8A|1|BA|C|1445|||A
*
4V8A|1|BA|G|1466
4V8A|1|BA|C|1467
*
4V8A|1|BA|G|1525
4V8A|1|BA|G|1526
*
4V8A|1|BA|C|1546
4V8A|1|BA|C|1547

Current chains

Chain BA

23S ribosomal RNA

Nearby chains