J4_4V8A_021

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V8A|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8A_021 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0773

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V8A|1|CA|G|115
4V8A|1|CA|A|116
4V8A|1|CA|G|117
4V8A|1|CA|U|118
4V8A|1|CA|A|119
4V8A|1|CA|A|120
4V8A|1|CA|C|121
4V8A|1|CA|G|122
*
4V8A|1|CA|U|239
4V8A|1|CA|C|240
*
4V8A|1|CA|G|286
4V8A|1|CA|U|287
4V8A|1|CA|A|288
4V8A|1|CA|G|289
*
4V8A|1|CA|C|311
4V8A|1|CA|C|312

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17