J4_4V8C_001

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V8C|1|AA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8C_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1252

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V8C|1|AA|C|268
4V8C|1|AA|U|269
*
4V8C|1|AA|G|370
4V8C|1|AA|A|371
4V8C|1|AA|G|372
4V8C|1|AA|U|373
4V8C|1|AA|A|374
4V8C|1|AA|C|375
*
4V8C|1|AA|G|399
4V8C|1|AA|G|400
4V8C|1|AA|A|401
4V8C|1|AA|A|402
4V8C|1|AA|U|403
4V8C|1|AA|C|404
4V8C|1|AA|U|405
4V8C|1|AA|G|406
*
4V8C|1|AA|U|421
4V8C|1|AA|A|422
4V8C|1|AA|A|423
4V8C|1|AA|G|424

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AZ

50S ribosomal protein L28