J4_4V8C_010

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8C_010 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.081

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V8C|1|AA|G|2643
4V8C|1|AA|G|2644
4V8C|1|AA|G|2645
4V8C|1|AA|C|2646
*
4V8C|1|AA|G|2674
4V8C|1|AA|A|2675
4V8C|1|AA|C|2676
*
4V8C|1|AA|G|2731
4V8C|1|AA|G|2732
4V8C|1|AA|A|2733
4V8C|1|AA|A|2734
4V8C|1|AA|G|2735
*
4V8C|1|AA|C|2769
4V8C|1|AA|G|2770
4V8C|1|AA|C|2771

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AM

50S ribosomal protein L13

Chain AN

50S ribosomal protein L14