J4_4V8D_019

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V8D|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8D_019 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1236

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V8D|1|DA|C|268
4V8D|1|DA|U|269
*
4V8D|1|DA|G|370
4V8D|1|DA|A|371
4V8D|1|DA|G|372
4V8D|1|DA|U|373
4V8D|1|DA|A|374
4V8D|1|DA|C|375
*
4V8D|1|DA|G|399
4V8D|1|DA|G|400
4V8D|1|DA|A|401
4V8D|1|DA|A|402
4V8D|1|DA|U|403
4V8D|1|DA|C|404
4V8D|1|DA|U|405
4V8D|1|DA|G|406
*
4V8D|1|DA|U|421
4V8D|1|DA|A|422
4V8D|1|DA|A|423
4V8D|1|DA|G|424

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DK

50S ribosomal protein L9

Chain DZ

50S ribosomal protein L28