J4_4V8E_017

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

4V8E|1|CA|G|1318, 4V8E|1|CA|A|1319, 4V8E|1|CA|U|1320, 4V8E|1|CA|G|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8E_017 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0665

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4V8E|1|CA|C|1317
4V8E|1|CA|G|1318
4V8E|1|CA|A|1319
4V8E|1|CA|U|1320
4V8E|1|CA|A|1321
4V8E|1|CA|A|1322
4V8E|1|CA|A|1323
*
4V8E|1|CA|U|1341
4V8E|1|CA|C|1342
*
4V8E|1|CA|G|1693
4V8E|1|CA|C|1694
4V8E|1|CA|G|1695
4V8E|1|CA|C|1696
*
4V8E|1|CA|G|2032
4V8E|1|CA|G|2033

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C0

50S ribosomal protein L17

Chain C5

50S ribosomal protein L32

Chain CS

50S ribosomal protein L22