J4_4V8E_020

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

4V8E|1|CA|A|1492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8E_020 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.223

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V8E|1|CA|G|1491
4V8E|1|CA|A|1492
4V8E|1|CA|C|1493
*
4V8E|1|CA|G|1514
4V8E|1|CA|C|1515
*
4V8E|1|CA|G|1572
4V8E|1|CA|G|1573
*
4V8E|1|CA|C|1594
4V8E|1|CA|C|1595

Current chains

Chain CA

RNA (2912-MER)

Nearby chains