J4_4V8E_022

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V8E|1|CA|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8E_022 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.071

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4V8E|1|CA|U|1865
4V8E|1|CA|U|1866
4V8E|1|CA|G|1867
*
4V8E|1|CA|C|1928
4V8E|1|CA|G|1929
*
4V8E|1|CA|C|1947
4V8E|1|CA|C|1948
4V8E|1|CA|U|1949
4V8E|1|CA|A|1950
4V8E|1|CA|A|1951
4V8E|1|CA|G|1952
4V8E|1|CA|G|1953
4V8E|1|CA|U|1954
4V8E|1|CA|A|1955
4V8E|1|CA|G|1956
*
4V8E|1|CA|C|1990
4V8E|1|CA|G|1991
4V8E|1|CA|A|1992
4V8E|1|CA|A|1993
4V8E|1|CA|A|1994
4V8E|1|CA|A|1995

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

Transfer RNA; tRNA