J4_4V8E_028
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V8E|1|DC|U|8, 4V8E|1|DC|U|48, 4V8E|1|DC|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8E_028 not in the Motif Atlas
- Homologous match to J4_5E81_027
- Geometric discrepancy: 0.0756
- The information below is about J4_5E81_027
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4V8E|1|DC|G|7
4V8E|1|DC|U|8
4V8E|1|DC|G|9
4V8E|1|DC|G|10
*
4V8E|1|DC|C|26
4V8E|1|DC|G|27
4V8E|1|DC|U|28
*
4V8E|1|DC|A|44
4V8E|1|DC|A|45
4V8E|1|DC|G|46
4V8E|1|DC|G|47
4V8E|1|DC|U|48
4V8E|1|DC|C|49
4V8E|1|DC|G|50
*
4V8E|1|DC|C|66
4V8E|1|DC|C|67
Current chains
- Chain DC
- TRNA-FMET
Nearby chains
- Chain C3
- 50S ribosomal protein L27
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CP
- 50S ribosomal protein L16
- Chain DA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DB
- TRNA-TYR
- Chain DP
- 30S RIBOSOMAL PROTEIN S13
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