3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
4V8F|1|BA|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V8F_011 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.1139
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V8F|1|BA|G|115
4V8F|1|BA|A|116
4V8F|1|BA|G|117
4V8F|1|BA|U|118
4V8F|1|BA|A|119
4V8F|1|BA|A|120
4V8F|1|BA|C|121
4V8F|1|BA|G|122
*
4V8F|1|BA|U|239
4V8F|1|BA|C|240
*
4V8F|1|BA|G|286
4V8F|1|BA|U|287
4V8F|1|BA|A|288
4V8F|1|BA|G|289
*
4V8F|1|BA|C|311
4V8F|1|BA|C|312

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BO
30S RIBOSOMAL PROTEIN S12
Chain BS
30S RIBOSOMAL PROTEIN S16
Chain BT
30S RIBOSOMAL PROTEIN S17

Coloring options:


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