J4_4V8F_029

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8F_029 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0936

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V8F|1|DA|G|2643
4V8F|1|DA|G|2644
4V8F|1|DA|G|2645
4V8F|1|DA|C|2646
*
4V8F|1|DA|G|2674
4V8F|1|DA|A|2675
4V8F|1|DA|C|2676
*
4V8F|1|DA|G|2731
4V8F|1|DA|G|2732
4V8F|1|DA|A|2733
4V8F|1|DA|A|2734
4V8F|1|DA|G|2735
*
4V8F|1|DA|C|2769
4V8F|1|DA|G|2770
4V8F|1|DA|C|2771

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DM

50S ribosomal protein L13

Chain DN

50S ribosomal protein L14