J4_4V8G_004

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V8G|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8G_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0543

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V8G|1|BA|C|268
4V8G|1|BA|U|269
*
4V8G|1|BA|G|370
4V8G|1|BA|A|371
4V8G|1|BA|G|372
4V8G|1|BA|U|373
4V8G|1|BA|A|374
4V8G|1|BA|C|375
*
4V8G|1|BA|G|399
4V8G|1|BA|G|400
4V8G|1|BA|A|401
4V8G|1|BA|A|402
4V8G|1|BA|U|403
4V8G|1|BA|C|404
4V8G|1|BA|U|405
4V8G|1|BA|G|406
*
4V8G|1|BA|U|421
4V8G|1|BA|A|422
4V8G|1|BA|A|423
4V8G|1|BA|G|424

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BI

50S Ribosomal Protein L9