J4_4V8H_018
3D structure
- PDB id
- 4V8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of HPF bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CU*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 4V8H|1|DA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8H_018 not in the Motif Atlas
- Homologous match to J4_9DFE_001
- Geometric discrepancy: 0.0515
- The information below is about J4_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8H|1|DA|C|268
4V8H|1|DA|U|269
*
4V8H|1|DA|G|370
4V8H|1|DA|A|371
4V8H|1|DA|G|372
4V8H|1|DA|U|373
4V8H|1|DA|A|374
4V8H|1|DA|C|375
*
4V8H|1|DA|G|399
4V8H|1|DA|G|400
4V8H|1|DA|A|401
4V8H|1|DA|A|402
4V8H|1|DA|U|403
4V8H|1|DA|C|404
4V8H|1|DA|U|405
4V8H|1|DA|G|406
*
4V8H|1|DA|U|421
4V8H|1|DA|A|422
4V8H|1|DA|A|423
4V8H|1|DA|G|424
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D1
- 50S Ribosomal Protein L28
- Chain DI
- 50S Ribosomal Protein L9
Coloring options: