3D structure

PDB id
4V8H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of HPF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CU*GAGUAC*GGAAUCUG*UAAG
Length
20 nucleotides
Bulged bases
4V8H|1|DA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V8H_018 not in the Motif Atlas
Homologous match to J4_9DFE_001
Geometric discrepancy: 0.0515
The information below is about J4_9DFE_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

4V8H|1|DA|C|268
4V8H|1|DA|U|269
*
4V8H|1|DA|G|370
4V8H|1|DA|A|371
4V8H|1|DA|G|372
4V8H|1|DA|U|373
4V8H|1|DA|A|374
4V8H|1|DA|C|375
*
4V8H|1|DA|G|399
4V8H|1|DA|G|400
4V8H|1|DA|A|401
4V8H|1|DA|A|402
4V8H|1|DA|U|403
4V8H|1|DA|C|404
4V8H|1|DA|U|405
4V8H|1|DA|G|406
*
4V8H|1|DA|U|421
4V8H|1|DA|A|422
4V8H|1|DA|A|423
4V8H|1|DA|G|424

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain D1
50S Ribosomal Protein L28
Chain DI
50S Ribosomal Protein L9

Coloring options:


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