J4_4V8I_001

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V8I|1|AA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8I_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0688

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V8I|1|AA|G|115
4V8I|1|AA|A|116
4V8I|1|AA|G|117
4V8I|1|AA|U|118
4V8I|1|AA|A|119
4V8I|1|AA|A|120
4V8I|1|AA|C|121
4V8I|1|AA|G|122
*
4V8I|1|AA|U|239
4V8I|1|AA|C|240
*
4V8I|1|AA|G|286
4V8I|1|AA|U|287
4V8I|1|AA|A|288
4V8I|1|AA|G|289
*
4V8I|1|AA|C|311
4V8I|1|AA|C|312

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AP

30S Ribosomal Protein S16

Chain AQ

30S Ribosomal Protein S17