J4_4V8J_018

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG

Length

30 nucleotides

Bulged bases

4V8J|1|CA|A|555, 4V8J|1|CA|A|798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8J|1|CA|C|552
4V8J|1|CA|G|553
4V8J|1|CA|U|554
4V8J|1|CA|A|555
4V8J|1|CA|A|556
4V8J|1|CA|A|557
4V8J|1|CA|G|558
4V8J|1|CA|G|559
4V8J|1|CA|G|560
*
4V8J|1|CA|C|747
4V8J|1|CA|G|748
4V8J|1|CA|A|749
4V8J|1|CA|A|750
4V8J|1|CA|A|751
4V8J|1|CA|G|752
*
4V8J|1|CA|C|793
4V8J|1|CA|C|794
4V8J|1|CA|C|795
4V8J|1|CA|U|796
4V8J|1|CA|A|797
4V8J|1|CA|A|798
4V8J|1|CA|A|799
4V8J|1|CA|C|800
4V8J|1|CA|G|801
4V8J|1|CA|A|802
4V8J|1|CA|U|803
4V8J|1|CA|G|804
*
4V8J|1|CA|C|856
4V8J|1|CA|C|857
4V8J|1|CA|G|858

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CL

30S ribosomal protein S12

Chain CO

30S ribosomal protein S15

Chain CQ

30S ribosomal protein S17

Chain DA

Large subunit ribosomal RNA; LSU rRNA