J4_4V8N_005

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V8N|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8N_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1484

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V8N|1|BA|C|268
4V8N|1|BA|U|269
*
4V8N|1|BA|G|370
4V8N|1|BA|A|371
4V8N|1|BA|G|372
4V8N|1|BA|U|373
4V8N|1|BA|A|374
4V8N|1|BA|C|375
*
4V8N|1|BA|G|399
4V8N|1|BA|G|400
4V8N|1|BA|A|401
4V8N|1|BA|A|402
4V8N|1|BA|U|403
4V8N|1|BA|C|404
4V8N|1|BA|U|405
4V8N|1|BA|G|406
*
4V8N|1|BA|U|421
4V8N|1|BA|A|422
4V8N|1|BA|A|423
4V8N|1|BA|G|424

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BI

50S RIBOSOMAL PROTEIN L9