J4_4V8O_004
3D structure
- PDB id
- 4V8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCGUC*GGCC
- Length
- 22 nucleotides
- Bulged bases
- 4V8O|1|AV|U|8, 4V8O|1|AV|U|47, 4V8O|1|AV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8O_004 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.5788
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V8O|1|AV|G|7
4V8O|1|AV|U|8
4V8O|1|AV|G|9
4V8O|1|AV|G|10
*
4V8O|1|AV|C|25
4V8O|1|AV|G|26
4V8O|1|AV|U|27
4V8O|1|AV|C|28
*
4V8O|1|AV|G|42
4V8O|1|AV|A|43
4V8O|1|AV|A|44
4V8O|1|AV|G|45
4V8O|1|AV|G|46
4V8O|1|AV|U|47
4V8O|1|AV|C|48
4V8O|1|AV|G|49
4V8O|1|AV|U|50
4V8O|1|AV|C|51
*
4V8O|1|AV|G|63
4V8O|1|AV|G|64
4V8O|1|AV|C|65
4V8O|1|AV|C|66
Current chains
- Chain AV
- PE HYBRID STATE TRNA FMET
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain B6
- 50S RIBOSOMAL PROTEIN L33
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 50S RIBOSOMAL PROTEIN L1
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