J4_4V8P_002
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CAUAAG*CGUC*GAG*CGUAGUCGG
- Length
- 22 nucleotides
- Bulged bases
- 4V8P|1|A1|C|232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|A1|C|184
4V8P|1|A1|A|185
4V8P|1|A1|U|186
4V8P|1|A1|A|187
4V8P|1|A1|A|188
4V8P|1|A1|G|189
*
4V8P|1|A1|C|205
4V8P|1|A1|G|206
4V8P|1|A1|U|207
4V8P|1|A1|C|208
*
4V8P|1|A1|G|212
4V8P|1|A1|A|213
4V8P|1|A1|G|214
*
4V8P|1|A1|C|226
4V8P|1|A1|G|227
4V8P|1|A1|U|228
4V8P|1|A1|A|229
4V8P|1|A1|G|230
4V8P|1|A1|U|231
4V8P|1|A1|C|232
4V8P|1|A1|G|233
4V8P|1|A1|G|234
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain AU
- RPL13
- Chain B2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- RPL4
- Chain BS
- RPL26
Coloring options: