J4_4V8P_004
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GGUUC*GGUUAC*GC*GUUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 4V8P|1|A1|U|1549
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|A1|G|1518
4V8P|1|A1|G|1519
4V8P|1|A1|U|1520
4V8P|1|A1|U|1521
4V8P|1|A1|C|1522
*
4V8P|1|A1|G|1546
4V8P|1|A1|G|1547
4V8P|1|A1|U|1548
4V8P|1|A1|U|1549
4V8P|1|A1|A|1550
4V8P|1|A1|C|1551
*
4V8P|1|A1|G|1639
4V8P|1|A1|C|1640
*
4V8P|1|A1|G|1853
4V8P|1|A1|U|1854
4V8P|1|A1|U|1855
4V8P|1|A1|C|1856
4V8P|1|A1|G|1857
4V8P|1|A1|U|1858
4V8P|1|A1|A|1859
4V8P|1|A1|C|1860
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain AB
- RPL39
- Chain AL
- RPL34
- Chain AP
- RPL38
- Chain B2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BO
- RPL19
- Chain BR
- RPL23A
- Chain BU
- RPL35
Coloring options: