J4_4V8P_008
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 4V8P|1|A1|U|2264, 4V8P|1|A1|U|2309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8P_008 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.2983
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8P|1|A1|C|2187
4V8P|1|A1|U|2188
4V8P|1|A1|G|2189
*
4V8P|1|A1|C|2243
4V8P|1|A1|G|2244
*
4V8P|1|A1|C|2262
4V8P|1|A1|U|2263
4V8P|1|A1|U|2264
4V8P|1|A1|A|2265
4V8P|1|A1|A|2266
4V8P|1|A1|G|2267
4V8P|1|A1|G|2268
4V8P|1|A1|U|2269
4V8P|1|A1|A|2270
4V8P|1|A1|G|2271
*
4V8P|1|A1|U|2305
4V8P|1|A1|G|2306
4V8P|1|A1|A|2307
4V8P|1|A1|A|2308
4V8P|1|A1|U|2309
4V8P|1|A1|G|2310
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain BA
- RPL8
- Chain GY
- RPL37A
- Chain H1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: