J4_4V8P_033
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CAAAUAU*AG*CCAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 4V8P|1|H1|A|1478, 4V8P|1|H1|U|1481
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8P_033 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.1607
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8P|1|H1|C|1477
4V8P|1|H1|A|1478
4V8P|1|H1|A|1479
4V8P|1|H1|A|1480
4V8P|1|H1|U|1481
4V8P|1|H1|A|1482
4V8P|1|H1|U|1483
*
4V8P|1|H1|A|1501
4V8P|1|H1|G|1502
*
4V8P|1|H1|C|1901
4V8P|1|H1|C|1902
4V8P|1|H1|A|1903
4V8P|1|H1|U|1904
*
4V8P|1|H1|A|2347
4V8P|1|H1|G|2348
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain GO
- RPL19
- Chain GQ
- RPL17
- Chain GW
- 60S RIBOSOMAL PROTEIN L31
Coloring options: